Organelle Analysis Plugins¶

The Organelle Analysis plugins in Microscopy Image Browser (MIB) offer specialized tools for studying organelle structures and properties in microscopy images. These plugins are located in the Plugins/Organelle Analysis folder of your MIB installation and are automatically detected when MIB starts.

Available Plugins¶

• Golgi Orientation
  Calculates the relative orientation of Golgi apparatus with respect to the nucleus or cell boundary from segmented 3-D models, reporting a distance-distribution metric per cell.
  Details

• Granularity
  Analyzes model granularity, such as the ratio of sheets to tubules in endoplasmic reticulum (ER) morphology, aiding in structural studies.
  Details

• MCcalc
  Uses ray-tracing to detect and quantify contacts between organelles (e.g., mitochondria and ER), ideal for spatial relationship studies.
  Details

• Surface Area 3D
  Computes the surface area of 3D-segmented objects, useful for volumetric analysis of organelles or structures.
  Details

• Thres Analysis for Objects
  Analyzes intensity properties of segmented objects with customizable thresholding, enhancing object-specific measurements.
  Details

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