During the first start MIB creates a template file mib_java_path.txt with the paths to Fiji and Omero.

• To use MIB with Fiji, modify the Fiji installation directory in mib_java_path.txt. See more about Fiji in the Fiji: Volume rendering and connection section
• To use MIB with Omero server, please follow these steps
• Access help and tutorials from the menu of MIB: im_browser->Menu->Help->Help or from mib.helsinki.fi/tutorials

• Windows in c:\temp\im_browser.mat or when c:\temp is not available then the configuration parameters can be found in C:\Users\User-name\AppData\Local\Temp\im_browser.mat
• Linux in the script directory or in the local tmp directory (/tmp)

The configuration file is automatically created after closing of MIB.
If MIB does not start check MATLAB path and/or delete c:\temp\im_browser.mat file.

MIB can be extended with various usable optional tools, unfortunately due to various reasons those tools can not be automatically installed and require manual installation or configuration.
Check the System Requirements section for optional software packages as FIJI, Omero and other options.

When using the BioFormats reader or FijiConnect you may get an error message that the amount of available Java heap space is too low:

This can be fixed by increasing Java Heap Space value in MATLAB

MIB under MATLAB environment

• Open MATLAB preferences
  
  Start MATLAB preferences dialog
• Navigate to
  MATLAB->General->Java Heap Memory
  Java Heap Memory settings
• Use the slider to increase Java Heap size to the desired value
• Press OK and restart MATLAB

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