mibDeepActivationsController Class Reference

class is a template class for using with GUI developed using appdesigner of Matlab More...

Inheritance diagram for mibDeepActivationsController:

Collaboration diagram for mibDeepActivationsController:

Public Member Functions
	mibDeepActivationsController (mibModel, varargin)
function	closeWindow ()
	closing mibDeepActivationsController window
function	updateWidgets ()
	update widgets of this window
function	updateBatchOptFromGUI (event)
function	returnBatchOpt (BatchOptOut)
	return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure
function status =	getNewImage (filename)
	load a new image from prediction image store
function	updatePreviewImage ()
	update preview of the original image
function	ShiftImage (event)
	callback for change of x1, y1, z1 coordinates to shift the patch
function	getActivations ()
	from the selected image area generate activations
function	showActivations ()
	show activations for the current image
function	changeImage (event)
	callback for change image buttons
function	makeCollage (silentMode)
	make collage image from activations

Static Public Member Functions
static function	ViewListner_Callback (obj, src, evnt)

Public Attributes
	mibModel
	handles to mibModel
	View
	handle to the view / mibDeepActivationsGUI
	listener
	a cell array with handles to listeners
	mibDeep
	a handle to parent mibDeep controller
	BatchOpt
	a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .NetworkLayerName{1} - [dropdown], cell string with the desired layer; NetworkLayerName{2} - [optional], an array with possible layers .ImageFilename{1} - [dropdown], cell string with the file name to show .z1{1} - numeric, number of slice for 3D datasets to show .x1{1} - numeric, image shift in x .y1{1} - numeric, image shift in y .patchZ{1} - numeric, position inside the activation block .filterId{1} - numeric, filter id of the activation block
	imgDS
	imageDatastore with images to be be explored
	imageOriginal
	a cropped original image that will be used to get activations, [height, width, color, depth]
	imageActivation
	returned activations for the imageOriginal
	deltaZ
	difference between the Z of the image and the show patch patch Z
	patchNetworkDims
	dimensions of network layer patch
	net
	a structure with the loaded network file .AugOpt2DStruct 1x1 1690 struct .AugOpt3DStruct 1x1 1253 struct .BatchOpt 1x1 23881 struct .InputLayerOpt 1x1 928 struct .TrainingOptionsStruct 1x1 2060 struct .classNames 4x1 492 cell .inputPatchSize 1x4 32 double .net 1x1 30905044 DAGNetwork .outputPatchSize 1x4 32 double
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is a template class for using with GUI developed using appdesigner of Matlab

obj.startController('mibDeepActivationsController'); // as GUI tool

or

// a code below was used for mibImageArithmeticController
BatchOpt.Parameter = 'test';  // fill edit boxes as strings
BatchOpt.Checkbox = true;     // fill checkboxes with logicals: true/false
BatchOpt.Popup = {'value'};        // value for the popups as a cell
BatchOpt.Radio = {'Radio1'};          // selection of radio buttons, as cell with the handle of the target radio button
BatchOpt.showWaitbar = true;  // show or not the waitbar
obj.startController('mibDeepActivationsController', [], BatchOpt); // start mibDeepActivationsController in the batch mode

or

// trigger return of the possible Options using returnBatchOpt function
// using notify syncBatch event
obj.startController('mibDeepActivationsController', [], NaN);

Constructor & Destructor Documentation

mibDeepActivationsController()

mibDeepActivationsController.mibDeepActivationsController	(		mibModel,
			varargin )

References handle.addlistener, mibDeepStoreLoadImages(), mibModel, mibUpdateFontSize(), moveWindowOutside(), handle.notify, updateBatchOptCombineFields_Shared(), and updateGUIFromBatchOpt_Shared().

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Member Function Documentation

changeImage()

function mibDeepActivationsController.changeImage

(

event

)

callback for change image buttons

Parameters

event

an event structure of appdesigner

Required fields of event:

References max, and min.

closeWindow()

function mibDeepActivationsController.closeWindow

(

)

closing mibDeepActivationsController window

References handle.isvalid, and handle.notify.

getActivations()

function mibDeepActivationsController.getActivations

(

)

from the selected image area generate activations

References min, and handle.permute.

getNewImage()

function status = mibDeepActivationsController.getNewImage

(

filename

)

load a new image from prediction image store

Parameters

filename

short filename of the image to show

Return values

status

logical switch, 1 - success

References min, and handle.permute.

makeCollage()

function mibDeepActivationsController.makeCollage

(

silentMode

)

make collage image from activations

Parameters

silentMode

logical ask or not for FigName and resize, see "generateSnapshots = false;" in the ShiftImage function

References mibInputMultiDlg(), handle.permute, and handle.reshape.

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returnBatchOpt()

function mibDeepActivationsController.returnBatchOpt

(

BatchOptOut

)

return structure with Batch Options and possible configurations via the notify syncBatch event Parameters: BatchOptOut: a local structure with Batch Options generated during Continue callback. It may contain more fields than obj.BatchOpt structure

References handle.notify.

ShiftImage()

function mibDeepActivationsController.ShiftImage

(

event

)

callback for change of x1, y1, z1 coordinates to shift the patch

Required fields of event:

References max, and min.

showActivations()

function mibDeepActivationsController.showActivations

(

)

show activations for the current image

References max, mibShowErrorDialog(), and min.

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updateBatchOptFromGUI()

function mibDeepActivationsController.updateBatchOptFromGUI

(

event

)

References updateBatchOptFromGUI_Shared().

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updatePreviewImage()

function mibDeepActivationsController.updatePreviewImage

(

)

update preview of the original image

References min.

updateWidgets()

function mibDeepActivationsController.updateWidgets

(

)

update widgets of this window

References updateGUIFromBatchOpt_Shared().

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ViewListner_Callback()

static function mibDeepActivationsController.ViewListner_Callback ( obj, src, evnt )

static

Member Data Documentation

BatchOpt

mibDeepActivationsController.BatchOpt

a structure compatible with batch operation name of each field should be displayed in a tooltip of GUI it is recommended that the Tags of widgets match the name of the fields in this structure .NetworkLayerName{1} - [dropdown], cell string with the desired layer; NetworkLayerName{2} - [optional], an array with possible layers .ImageFilename{1} - [dropdown], cell string with the file name to show .z1{1} - numeric, number of slice for 3D datasets to show .x1{1} - numeric, image shift in x .y1{1} - numeric, image shift in y .patchZ{1} - numeric, position inside the activation block .filterId{1} - numeric, filter id of the activation block

closeEvent

EVENT mibDeepActivationsController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

deltaZ

mibDeepActivationsController.deltaZ

difference between the Z of the image and the show patch patch Z

imageActivation

mibDeepActivationsController.imageActivation

returned activations for the imageOriginal

imageOriginal

mibDeepActivationsController.imageOriginal

a cropped original image that will be used to get activations, [height, width, color, depth]

imgDS

mibDeepActivationsController.imgDS

imageDatastore with images to be be explored

listener

mibDeepActivationsController.listener

a cell array with handles to listeners

mibDeep

mibDeepActivationsController.mibDeep

a handle to parent mibDeep controller

mibModel

mibDeepActivationsController.mibModel

handles to mibModel

Referenced by mibDeepActivationsController().

net

mibDeepActivationsController.net

a structure with the loaded network file .AugOpt2DStruct 1x1 1690 struct .AugOpt3DStruct 1x1 1253 struct .BatchOpt 1x1 23881 struct .InputLayerOpt 1x1 928 struct .TrainingOptionsStruct 1x1 2060 struct .classNames 4x1 492 cell .inputPatchSize 1x4 32 double .net 1x1 30905044 DAGNetwork .outputPatchSize 1x4 32 double

patchNetworkDims

mibDeepActivationsController.patchNetworkDims

dimensions of network layer patch

View

mibDeepActivationsController.View

handle to the view / mibDeepActivationsGUI

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The documentation for this class was generated from the following file:

• Classes/mibDeepActivationsController.m