To download MIB please select the distribution and press the corresponding button on the right:

• MATLAB version - we recommend to use this option, requires MATLAB license (not compatible with R2025a+)
• Academic Standalone for Windows - MIB compiled for MATLAB R2024b
• Academic Standalone for MacOS - MIB compiled for MATLAB R2024b for Mac OS
• Academic Standalone for Linux - MIB compiled for MATLAB R2024a for Linux
• GitHub - MIB source code on GitHub, virtually identical to the MATLAB version above

Please look here for installation details.

BETA RELEASE Version 2.92 (beta 08) (03.09.2025)

b08

b08

• [2.9104] Fix mibVolRenAppController to import overlays for R2024a, update BioFormats to 8.2.0, update MatTomo to 1.8.0
• [2.9105] added Select Image Frame to Batch processing, bug fixes, updated syntax of BatchOpt parameters for radio-groups
• [2.9106] added image conversion to OME-ZARR v2/v3 into Plugins->File processing->Image converter, added Future compatibility flag for GPU Devices
• [2.9108] added loading of OME-ZARR v2/v3 via Combine selected dataset option available via RMB (virtual mode, requires zarr-python)

Version 2.9103 (03.06.2025)
• Added Segment-anything-2 and 2.1 models for manual/semi-automatic segmentation
• Added Interactive 3D mode for Segment-anything-2 models
• Added a new version of automatic alignment (Automatic feature-based v2)
• Updated documentation
• Added loading of part of dataset using BioFormats reader
• Added modification of the Info box into freeline of Measure Tool
• Added Multi-rename tool for batch renaming of files: Plugins->File processing->Multi rename tool
• Added option of returning back to a slice: use Alt+scroll wheel to change slice; release Alt to return back to the slice when Alt+scroll wheel was triggered
• Added operations with materials: add, insert, rename, reorder, swap, remove, export, save
• Added swap of colors in the model from the segmentation panel
• Added SIFT feature detector for automatic alignment
• Added shortcuts (Shift+D, Ctrl+D) for two favorite segmentation tools
• Added presets for segmentation tool (Shift + 1/2/3 stored the current state and 1/2/3 restores it)
• Added warning dialog when loading files, while a model exists
• Added use of annotations to perform single landmark point alignment
• Added automatic interpolation of annotations when they added using shift+mouse click
• Added new rendering modes for volumes (CinematicRendering, LightScattering) and overlays (LabelOverlay, VolumeOverlay, GradientOverlay) in MIB rendering
• Added rotation around selected object, ambient and diffuse lights in MIB 3D volume rendering
• Added pattern rename of annotations
• Fixed adding a model in the rotated view when the blockMode is on
• Fixed 3D rendering of the selected material
• Replaced Alt+Shift + with Alt+Shift+Ctrl + to pan the view using Wacom pen eraser
• [DeepMIB] Added U-net +Encoder architecture into 2D and 2.5D semantic segmentation workflows
• [DeepMIB] Rearranged selection of the encoder network
• [DeepMIB] Added weights preview in the Activation explorer
• [DeepMIB] Added image downsampling parameter for automatic resizing of images for prediction
• [DeepMIB] Added automatic saving of the custom training plot as PNG and MATLAB-FIG
• [DeepMIB] Added saving of MIB version into the mibCfg and mibDeep files
• [DeepMIB] Fixed Explore activations when images for prediction are not under Images directory
• [DeepMIB] Fixed training of 2.5D networks without augmentations
• [DeepMIB] Fixed correct handling of random numbers in the augmentation patches preview
• [DeepMIB] Fixed accidental appearance of Deep.AugOpt2D.ImageNoise field in augmentation preferences
• [2.9102] Added an option to automatically show a dialog to provide information about an added measurement into the Measure Tool
• [2.9102] Fixed the Graphcut tool in the 2D current slice mode
• [2.9103] Bug fixes



Click to access archive with previous versions of MIB2

MIB version 1 [LEGACY RELEASE]





Version 1.305 23.12.2016 [LEGACY RELEASE]
• Improved and simplified the Segmentation panel
• Added list of recent directories
• Added "Mask_" prefix to filename when saving masks
• Added "FirstAxisLength" and "SecondAxisLength" properties to the Get Statistics dialog for calculation of exact lengths of the objects (ver 1.302)
• Added default state of the link channels checkbox to selected in the Display adjustment dialog (ver 1.302)
• The contrast normalization over selected areas in Z does not require selection of all slices
• Fix of substructures in Dataset Info dialog
• Fix of fine-tune checkbox for the freehand mode of the measure tool
• Improved performance of black-and-white thresholding
• Fix of add matarial bug (ver 1.303)
• Fix of export annotations to a file for MacOS (ver 1.303)
• Fix startup crashes for compiled MIB on some windows configurations (ver 1.304)
• Update of font size for buttons and popup menus (ver 1.305)
• Fix of a bug in the masked-based image alignment tool (ver 1.305)