mibMembraneDetectionController Class Reference

class is responsible for showing the Membrane Detection window, available from MIB->Menu->Tools->Classifiers->Membrane detections More...

Inheritance diagram for mibMembraneDetectionController:

Collaboration diagram for mibMembraneDetectionController:

Public Member Functions
	mibMembraneDetectionController (mibModel, parameter)
function	closeWindow ()
	closing mibMembraneDetectionController window
function	updateWidgets ()
	update widgets of this window
function	tempDirEdit_Callback ()
	callback for selection of the output directory
function	tempDirSelectBtn_Callback ()
	callback for selection of the output directory
function	classifierFilenameEdit_Callback ()
	callback for selection of the classifier filename
function	classifierFilenameBtn_Callback ()
	callback for selection of the classifier filename
function	updateLoglist (addText)
	update the log list with status events reported by the function
function	wipeTempDirBtn_Callback ()
	callback for press wipeTempDirBtn; wipe temp directory
function	trainClassifierBtn_Callback ()
	callback for press of trainClassifierBtn
function	predictSlice_Callback ()
	callback for predictSlice; predict the current slice
function	saveClassifierBtn_Callback ()
	callback for press of saveClassifierBtn; save classifier to disk
function	trainClassifier ()
	train random forest based on skript_trainClassifier_for_membraneDetection.m by Verena Kaynig
function	predictDataset (sliceNumber)
	predict dataset using the random forest classifier

Static Public Member Functions
static function	ViewListner_Callback2 (obj, src, evnt)

Public Attributes
	mibModel
	handles to the model
	View
	handle to the view
	listener
	a cell array with handles to listeners
	classFilename
	filename for classifier
	dirOut
	output directory
	maxNumberOfSamplesPerClass
	max Number Of Samples Per Class
	forest
	structure with classifier info
EVENT	closeEvent
	> Description of events event firing when window is closed
Public Attributes inherited from handle
	addlistener
	Creates a listener for the specified event and assigns a callback function to execute when the event occurs.
	notify
	Broadcast a notice that a specific event is occurring on a specified handle object or array of handle objects.
	delete
	Handle object destructor method that is called when the object's lifecycle ends.
	disp
	Handle object disp method which is called by the display method. See the MATLAB disp function.
	display
	Handle object display method called when MATLAB software interprets an expression returning a handle object that is not terminated by a semicolon. See the MATLAB display function.
	findobj
	Finds objects matching the specified conditions from the input array of handle objects.
	findprop
	Returns a meta.property objects associated with the specified property name.
	fields
	Returns a cell array of string containing the names of public properties.
	fieldnames
	Returns a cell array of string containing the names of public properties. See the MATLAB fieldnames function.
	isvalid
	Returns a logical array in which elements are true if the corresponding elements in the input array are valid handles. This method is Sealed so you cannot override it in a handle subclass.
	eq
	Relational functions example. See details for more information.
	transpose
	Transposes the elements of the handle object array.
	permute
	Rearranges the dimensions of the handle object array. See the MATLAB permute function.
	reshape
	hanges the dimensions of the handle object array to the specified dimensions. See the MATLAB reshape function.
	sort
	ort the handle objects in any array in ascending or descending order.

Detailed Description

class is responsible for showing the Membrane Detection window, available from MIB->Menu->Tools->Classifiers->Membrane detections

Constructor & Destructor Documentation

mibMembraneDetectionController()

mibMembraneDetectionController.mibMembraneDetectionController	(		mibModel,
			parameter )

References handle.addlistener, mibModel, mibRescaleWidgets(), and mibUpdateFontSize().

Here is the call graph for this function:

Member Function Documentation

classifierFilenameBtn_Callback()

function mibMembraneDetectionController.classifierFilenameBtn_Callback

(

)

callback for selection of the classifier filename

References mib_uigetfile().

Here is the call graph for this function:

classifierFilenameEdit_Callback()

function mibMembraneDetectionController.classifierFilenameEdit_Callback

(

)

callback for selection of the classifier filename

closeWindow()

function mibMembraneDetectionController.closeWindow

(

)

closing mibMembraneDetectionController window

References handle.isvalid, and handle.notify.

predictDataset()

function mibMembraneDetectionController.predictDataset

(

sliceNumber

)

predict dataset using the random forest classifier

Parameters

sliceNumber

[optional] number of slice for prediction

References classRF_predict(), forest, max, membraneFeatures(), handle.notify, handle.reshape, and skeletonize().

Here is the call graph for this function:

predictSlice_Callback()

function mibMembraneDetectionController.predictSlice_Callback

(

)

callback for predictSlice; predict the current slice

saveClassifierBtn_Callback()

function mibMembraneDetectionController.saveClassifierBtn_Callback

(

)

callback for press of saveClassifierBtn; save classifier to disk

References forest.

tempDirEdit_Callback()

function mibMembraneDetectionController.tempDirEdit_Callback

(

)

callback for selection of the output directory

tempDirSelectBtn_Callback()

function mibMembraneDetectionController.tempDirSelectBtn_Callback

(

)

callback for selection of the output directory

trainClassifier()

function mibMembraneDetectionController.trainClassifier

(

)

train random forest based on skript_trainClassifier_for_membraneDetection.m by Verena Kaynig

References classRF_predict(), classRF_train(), max, membraneFeatures(), handle.notify, handle.reshape, and skeletonize().

Here is the call graph for this function:

trainClassifierBtn_Callback()

function mibMembraneDetectionController.trainClassifierBtn_Callback

(

)

callback for press of trainClassifierBtn

updateLoglist()

function mibMembraneDetectionController.updateLoglist

(

addText

)

update the log list with status events reported by the function

updateWidgets()

function mibMembraneDetectionController.updateWidgets

(

)

update widgets of this window

References max.

ViewListner_Callback2()

static function mibMembraneDetectionController.ViewListner_Callback2 ( obj, src, evnt )

static

wipeTempDirBtn_Callback()

function mibMembraneDetectionController.wipeTempDirBtn_Callback

(

)

callback for press wipeTempDirBtn; wipe temp directory

Member Data Documentation

classFilename

mibMembraneDetectionController.classFilename

filename for classifier

closeEvent

EVENT mibMembraneDetectionController.closeEvent

> Description of events event firing when window is closed

Events

closeEvent

dirOut

mibMembraneDetectionController.dirOut

output directory

forest

mibMembraneDetectionController.forest

structure with classifier info

Referenced by predictDataset(), and saveClassifierBtn_Callback().

listener

mibMembraneDetectionController.listener

a cell array with handles to listeners

maxNumberOfSamplesPerClass

mibMembraneDetectionController.maxNumberOfSamplesPerClass

max Number Of Samples Per Class

mibModel

mibMembraneDetectionController.mibModel

handles to the model

Referenced by mibMembraneDetectionController().

View

mibMembraneDetectionController.View

handle to the view

---

The documentation for this class was generated from the following file:

• Classes/@mibMembraneDetectionController/mibMembraneDetectionController.m